Data as genotypes? Yes = 1, No = 0
0
Genetic model: Dominant=0,Recessive=1
0
Read old file?: (0=no, 1=yes):
0
Use fixed random seed?:(0 = no (=random), negative integer = yes (=fixed), and is the seed):
0
# chromosomes (N):
148					
# loci per chromosome (L):
5				
Numbers of haplotypes in the normal(base) pop.:
1	2	2	1	2	2
1	2	1	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	2	1	2
1	2	2	2	1	2
1	2	2	2	2	2
1	2	2	2	1	2
1	1	2	1	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	1	1	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	1	2	2	2
1	2	1	2	2	2
1	2	1	2	2	2
1	2	1	2	2	2
1	2	2	2	2	2
1	2	2	1	2	2
1	2	2	2	2	2
1	2	2	2	2	1
1	2	1	2	2	2
1	1	2	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	1	2	2
1	2	2	2	1	2
1	2	-1	1	2	-1
1	2	-1	2	2	-1
1	2	1	2	2	2
1	2	2	2	2	1
1	1	1	1	1	2
1	2	2	2	2	2
1	2	1	1	2	2
1	2	2	2	1	2
1	2	1	2	1	2
1	2	2	1	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	1	2	1	2
1	2	2	1	2	2
1	2	2	1	2	2
1	2	2	1	2	2
1	2	2	2	2	2
1	2	1	2	1	2
1	2	1	2	2	2
1	1	1	2	2	2
1	2	1	2	1	2
1	2	2	1	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	1	2	2
1	2	1	1	2	2
1	1	1	2	2	2
1	1	1	2	2	2
1	2	2	2	-1	2
1	2	1	2	2	2
1	2	2	1	2	1
1	2	2	2	2	2
1	2	1	2	2	2
1	2	2	2	2	2
1	2	1	1	2	2
1	2	1	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	1	2	2
1	2	2	2	2	2
1	2	2	1	2	2
1	2	1	1	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	-1	2	1	-1
1	2	2	2	2	2
1	2	1	2	2	2
1	2	2	2	2	2
1	2	1	2	2	2
1	2	2	1	2	2
1	2	1	2	2	2
1	2	1	2	1	2
1	2	1	2	2	2
1	2	1	2	2	2
1	2	2	2	2	2
1	2	2	2	1	2
1	2	2	2	1	2
1	2	1	2	2	2
1	2	2	1	2	2
1	2	2	1	1	1
1	2	1	2	1	2
1	2	2	2	2	2
1	2	1	2	2	1
1	2	2	2	2	2
1	2	1	1	2	2
1	2	1	2	1	2
1	1	2	2	2	2
1	2	2	1	2	2
1	2	2	2	2	2
1	2	2	1	2	2
1	1	2	1	2	2
1	2	2	2	2	2
1	2	2	2	2	2
1	2	2	1	2	2
1	2	2	2	2	2
1	2	1	2	2	2
1	2	2	2	1	2
1	2	2	1	2	2
1	2	2	1	2	2
1	2	1	2	2	2
1	2	2	2	2	2
1	2	1	2	2	2
1	1	1	2	2	2
1	2	2	2	2	2
1	2	1	2	2	1
1	2	2	2	2	2
1	2	2	2	2	2
1	2	1	2	2	2
1	2	1	1	1	2
1	1	1	1	1	2
1	2	1	1	2	2
1	2	2	2	2	2
Map distances:
0.0	0.00013	0.000165	0.000195	0.000205
Run simulation?:
0
Mutation location (only used for simulated data):
-0.0008559
Mutation's low and high boundaries
-0.05 0.05
# simultaneous runs:
2
Starting value(s) for recdist. for each simul. run (-99 for random):
-99
Population growth rate:
0.085				
Proportion of population sampled:
0.001825			
Iterate ancestral states,mutation age,mutation location, allele freq. (0=no, 1=yes):
1 1 1 1		
Flip (potentially) all loci? (0=no, 1=yes):
0		
Adjustment level for tree, recdist, ancestral, and internal states,alleles:
1.0	3.0 0.005	0.5	0.5 0.1 1
Burn-in iterations:
1000000					
Iterations:
1000000						
Screen update and file update intervals:
100 100 1 0 		
Number of histogram bars:
200				
Alpha level for recdist histogram:
0.05			
Mutation age (-99 for random):
100
Mutation age boundaries:
0 50000						
Star genealogy (0=no, 1=yes):
0			
Loci for the root  (1xL) (-99):
1 1 1 1 1
Frequency, and loci for the tip chromosomes (?x(L+1)):
79 1 1 1 1 1
31 1 1 1 1 2
18 1 1 1 2 2
5  1 1 1 2 1
5  2 2 2 2 1
4  1 2 1 1 1
2  1 2 1 1 2
1  2 2 2 1 2
1  2 2 2 2 2
1  2 1 2 1 2
1  2 1 1 1 1
Use sequence weights?
0
Weights for exons,introns,non-genes
1 0.17 0.02
Input file:
ncbi.txt
301500
301700
303234
311111
312456